Bajothang Higher Secondary School was formally established as a Junior High School. It was officially inaugurated on 10th April 1997 by the then Hon’ble Secretary, Minstry of Health and Education, Dasho Sangay Ngedup.
Mr. Rabgay Tobden was the first Headmaster with 12 teachers. The school has been upgraded to Higher Secondary School in March 2003 and the first batch of ISC (Class XII) passed out in December 2004. The school is located besides the silent Punatshangchu which flows at a stone throw distance from the main school buildings. It is about less than half a kilometer from the new Wangdi town-ship under Tedtsho geog.